Install

Requirements

  • Roche 454 Analysis Software(gsAssembler, runProject)
  • Everything should be bundled with the pipeline

Installation

  1. Clone repo
git clone https://github.com/VDBWRAIR/bactpipeline.git
  1. Enter code directory
cd bactpipeline
  1. Install python virtualenv
virtualenv env
. env/bin/activate
  1. Install bactpipeline
pip install -r requirements.txt
python setup.py install